RNAseq Processing
This module accepts RNAseq files and converts them into a feature count table for downstream statistical and functional analysis.
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For RNAseq from organisms without reference genome, ExpressAnalyst uses our
Seq2Fun algorithm to perform
sensitive translated searches to identify and quantify homologous protein sequences using comprehensive databases
for ~30
taxonomic groups covering >600 organisms.
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For RNAseq from species with reference genomes, ExpressAnalyst uses the Kallisto algorithm with
built-in reference genomes for
~20 common organisms.
Since uploading large files can be very time consuming,
two different options are offered:
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